Engineering of a Red Fluorogenic Protein/Merocyanine Complex for Live-Cell Imaging
Dr. Elizabeth M. Santos
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Present address: Dow Performance Silicones, 2200 W. Salzburg Road, Midland, MI, 48686 USA
These authors contributed equally to this work.
Search for more papers by this authorDr. Tetyana Berbasova
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
These authors contributed equally to this work.
Search for more papers by this authorDr. Wenjing Wang
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
These authors contributed equally to this work.
Search for more papers by this authorRahele Esmatpour Salmani
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorDr. Wei Sheng
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorDr. Chrysoula Vasileiou
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorCorresponding Author
Dr. James H. Geiger
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorCorresponding Author
Prof. Dr. Babak Borhan
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorDr. Elizabeth M. Santos
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Present address: Dow Performance Silicones, 2200 W. Salzburg Road, Midland, MI, 48686 USA
These authors contributed equally to this work.
Search for more papers by this authorDr. Tetyana Berbasova
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
These authors contributed equally to this work.
Search for more papers by this authorDr. Wenjing Wang
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
These authors contributed equally to this work.
Search for more papers by this authorRahele Esmatpour Salmani
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorDr. Wei Sheng
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorDr. Chrysoula Vasileiou
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorCorresponding Author
Dr. James H. Geiger
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorCorresponding Author
Prof. Dr. Babak Borhan
Department of Chemistry, Michigan State University, 578 S. Shaw Lane, East Lansing, MI, 48824 USA
Search for more papers by this authorDedicated to the memory of Professor Koji Nakanishi.
Graphical Abstract
Abstract
A reengineered human cellular retinol binding protein II (hCRBPII), a 15-kDa protein belonging to the intracellular lipid binding protein (iLBP) family, generates a highly fluorescent red pigment through the covalent linkage of a merocyanine aldehyde to an active site lysine residue. The complex exhibits “turn-on” fluorescence, due to a weakly fluorescent aldehyde that “lights up” with subsequent formation of a strongly fluorescent merocyanine dye within the binding pocket of the protein. Cellular penetration of merocyanine is rapid, and fluorophore maturation is nearly instantaneous. The hCRBPII/merocyanine complex displays high quantum yield, low cytotoxicity, specificity in labeling organelles, and compatibility in both cancer cell lines and yeast cells. The hCRBPII/merocyanine tag is brighter than most common red fluorescent proteins.
Conflict of interest
The authors declare no conflict of interest.
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References
- 1
- 1aM. P. Bruchez, Curr. Opin. Chem. Biol. 2015, 27, 18–23;
- 1bD. M. Chudakov, M. V. Matz, S. Lukyanov, K. A. Lukyanov, Physiol. Rev. 2010, 90, 1103–1163;
- 1cR. N. Day, M. W. Davidson, Chem. Soc. Rev. 2009, 38, 2887–2921;
- 1dJ. R. Enterina, L. Wu, R. E. Campbell, Curr. Opin. Chem. Biol. 2015, 27, 10–17;
- 1eA. S. Mishin, V. V. Belousov, K. M. Solntsev, K. A. Lukyanov, Curr. Opin. Chem. Biol. 2015, 27, 1–9;
- 1fR. H. Newman, M. D. Fosbrink, J. Zhang, Chem. Rev. 2011, 111, 3614–3666;
- 1gK. Nienhaus, G. U. Nienhaus, Chem. Soc. Rev. 2014, 43, 1088–1106;
- 1hS. Okumoto, A. Jones, W. B. Frommer, Annu. Rev. Plant Biol. 2012, 63, 663–706;
- 1iD. M. Shcherbakova, V. V. Verkhusha, Curr. Opin. Chem. Biol. 2014, 20, 60–68.
- 2
- 2aD. Landgraf, B. Okumus, P. Chien, T. A. Baker, J. Paulsson, Nat. Methods 2012, 9, 480-U498;
- 2bJ. Wiedenmann, F. Oswald, G. U. Nienhaus, IUBMB Life 2009, 61, 1029–1042.
- 3
- 3aB. A. Griffin, S. R. Adams, R. Y. Tsien, Science 1998, 281, 269–272;
- 3bC. Hoffmann, G. Gaietta, A. Zurn, S. R. Adams, S. Terrillon, M. H. Ellisman, R. Y. Tsien, M. J. Lohse, Nat. Protoc. 2010, 5, 1666–1677;
- 3cC. Jing, V. W. Cornish, Acc. Chem. Res. 2011, 44, 784–792;
- 3dR. A. Scheck, A. Schepartz, Acc. Chem. Res. 2011, 44, 654–665.
- 4
- 4aC. G. England, H. Luo, W. Cai, Bioconjugate Chem. 2015, 26, 975–986;
- 4bD. S. Liu, W. S. Phipps, K. H. Loh, M. Howarth, A. Y. Ting, ACS Nano 2012, 6, 11080–11087;
- 4cG. V. Los, L. P. Encell, M. G. McDougall, D. D. Hartzell, N. Karassina, C. Zimprich, M. G. Wood, R. Learish, R. F. Ohane, M. Urh, D. Simpson, J. Mendez, K. Zimmerman, P. Otto, G. Vidugiris, J. Zhu, A. Darzins, D. H. Klaubert, R. F. Bulleit, K. V. Wood, ACS Chem. Biol. 2008, 3, 373–382;
- 4dJ.-C. Tseng, H. A. Benink, M. G. McDougall, I. Chico-Calero, A. L. Kung, Curr. Chem. Genomics 2012, 6, 48–54.
- 5
- 5aC. Jing, S. S. Gallagher, V. W. Cornish, J. Gen. Physiol. 2010, 136, 8A–8A;
- 5bL. W. Miller, Y. F. Cai, M. P. Sheetz, V. W. Cornish, Nat. Methods 2005, 2, 255–257;
- 5cC. Jing, V. W. Cornish, ACS Chem. Biol. 2013, 8, 1704–1712.
- 6
- 6aN. B. Cole, Curr. Protoc. Protein Sci. 2013, 73, 30.31.31–30.31.16;
- 6bK. Kolberg, C. Puettmann, A. Pardo, J. Fitting, S. Barth, Curr. Pharm. Des. 2013, 19, 5406–5413.
- 7
- 7aB. T. Worrell, J. A. Malik, V. V. Fokin, Science 2013, 340, 457–460;
- 7bM. S. Ziegler, K. V. Lakshmi, T. D. Tilley, J. Am. Chem. Soc. 2017, 139, 5378–5386.
- 8N. J. Agard, J. A. Prescher, C. R. Bertozzi, J. Am. Chem. Soc. 2004, 126, 15046–15047.
- 9
- 9aS. S. Panda, C. D. Hall, A. A. Oliferenko, A. R. Katritzky, Acc. Chem. Res. 2014, 47, 1076–1087;
- 9bD. M. Patterson, L. A. Nazarova, J. A. Prescher, ACS Chem. Biol. 2014, 9, 592–605;
- 9cP. Shieh, C. R. Bertozzi, Org. Biomol. Chem. 2014, 12, 9307–9320;
- 9dS. S. van Berkel, M. B. van Eldijk, J. C. M. van Hest, Angew. Chem. Int. Ed. 2011, 50, 8806–8827; Angew. Chem. 2011, 123, 8968–8989;
- 9eZ.-P. A. Wang, C.-L. Tian, J.-S. Zheng, RSC Adv. 2015, 5, 107192–107199.
- 10
- 10aC. R. Becer, R. Hoogenboom, U. S. Schubert, Angew. Chem. Int. Ed. 2009, 48, 4900–4908; Angew. Chem. 2009, 121, 4998–5006;
- 10bM. D. Best, M. M. Rowland, H. E. Bostic, Acc. Chem. Res. 2011, 44, 686–698;
- 10cM. F. Debets, S. S. Van Berkel, J. Dommerholt, A. J. Dirks, F. P. J. T. Rutjes, F. L. Van Delft, Acc. Chem. Res. 2011, 44, 805–815;
- 10dM. F. Debets, C. W. J. van der Doelen, F. P. J. T. Rutjes, F. L. van Delft, ChemBioChem 2010, 11, 1168–1184;
- 10eJ. C. Jewett, C. R. Bertozzi, Chem. Soc. Rev. 2010, 39, 1272–1279.
- 11
- 11aV. Singh, P. Bhalerao, B. C. Sahu, S. M. Mobin, Tetrahedron 2013, 69, 137–146;
- 11bJ. R. Zimmerman, O. Johntony, D. Steigerwald, C. Criss, B. J. Myers, D. H. Kinder, Org. Lett. 2015, 17, 3256–3259.
- 12
- 12aP. Agarwal, J. van der Weijden, E. M. Sletten, D. Rabuka, C. R. Bertozzi, Proc. Natl. Acad. Sci. USA 2013, 110, 46–51;
- 12bC. S. McKay, M. G. Finn, Chem. Biol. 2014, 21, 1075–1101;
- 12cD. M. Patterson, J. A. Prescher, Curr. Opin. Chem. Biol. 2015, 28, 141–149.
- 13
- 13aY. Kamikawa, Y. Hori, K. Yamashita, L. Jin, S. Hirayama, D. M. Standley, K. Kikuchi, Chem. Sci. 2016, 7, 308–314;
- 13bY. Hori, T. Norinobu, M. Sato, K. Arita, M. Shirakawa, K. Kikuchi, J. Am. Chem. Soc. 2013, 135, 12360–12365;
- 13cY. Hori, K. Nakaki, M. Sato, S. Mizukami, K. Kikuchi, Angew. Chem. Int. Ed. 2012, 51, 5611–5614; Angew. Chem. 2012, 124, 5709–5712;
- 13dY. Hori, S. Hirayama, M. Sato, K. Kikuchi, Angew. Chem. Int. Ed. 2015, 54, 14368–14371; Angew. Chem. 2015, 127, 14576–14579;
- 13eY. Hori, H. Ueno, S. Mizukami, K. Kikuchi, J. Am. Chem. Soc. 2009, 131, 16610–16611;
- 13fM. A. Plamont, E. Billon-Denis, S. Maurin, C. Gauron, F. M. Pimenta, C. G. Specht, J. Shi, J. Querard, B. Pan, J. Rossignol, K. Moncoq, N. Morellet, M. Volovitch, E. Lescop, Y. Chen, A. Triller, S. Vriz, T. Le Saux, L. Jullien, A. Gautier, Proc. Natl. Acad. Sci. USA 2016, 113, 497–502.
- 14
- 14aJ. J. He, Y. Wang, M. A. Missinato, E. Onuoha, L. A. Perkins, S. C. Watkins, C. M. St. Croix, M. Tsang, M. P. Bruchez, Nat. Methods 2016, 13, 263–268;
- 14bC. A. Telmer, R. Verma, H. B. Teng, S. Andreko, L. Law, M. P. Bruchez, ACS Chem. Biol. 2015, 10, 1239–1246.
- 15
- 15aJ. D. Cohen, P. Zou, A. Y. Ting, ChemBioChem 2012, 13, 888–894;
- 15bM. Fernández-Suárez, H. Baruah, L. Martinez-Hernandez, K. T. Xie, J. M. Baskin, C. R. Bertozzi, A. Y. Ting, Nat. Biotechnol. 2007, 25, 1483–1487;
- 15cD. S. Liu, L. G. Nivon, F. Richter, P. J. Goldman, T. J. Deerinck, J. Z. Yao, D. Richardson, W. S. Phipps, A. Z. Ye, M. H. Ellisman, C. L. Drennan, D. Baker, A. Y. Ting, Proc. Natl. Acad. Sci. USA 2014, 111, E 4551–E4559;
- 15dC. Uttamapinant, K. A. White, H. Baruah, S. Thompson, M. Fernandez-Suarez, S. Puthenveetil, A. Y. Ting, Proc. Natl. Acad. Sci. USA 2010, 107, 10914–10919.
- 16
- 16aE. Prifti, L. Reymond, M. Umebayashi, R. Hovius, H. Riezman, K. Johnsson, ACS Chem. Biol. 2014, 9, 606–612;
- 16bY. C. Chen, K. Tsao, J. W. Keillor, Can. J. Chem. 2015, 93, 389–398;
- 16cY. Hori, K. Kikuchi, Curr. Opin. Chem. Biol. 2013, 17, 644–650;
- 16dW. Liu, F. Li, X. Chen, J. Hou, L. Yi, Y. W. Wu, J. Am. Chem. Soc. 2014, 136, 4468–4471;
- 16eT. K. Liu, P. Y. Hsieh, Y. D. Zhuang, C. Y. Hsia, C. L. Huang, H. P. Lai, H. S. Lin, I. C. Chen, H. Y. Hsu, K. T. Tan, ACS Chem. Biol. 2014, 9, 2359–2365;
- 16fY. C. Chen, C. M. Clouthier, K. Tsao, M. Strmiskova, H. Lachance, J. W. Keillor, Angew. Chem. Int. Ed. 2014, 53, 13785–13788; Angew. Chem. 2014, 126, 14005–14008;
- 16gX. L. Sun, A. H. Zhang, B. Baker, L. Sun, A. Howard, J. Buswell, D. Maurel, A. Masharina, K. Johnsson, C. J. Noren, M. Q. Xu, I. R. Correa, ChemBioChem 2011, 12, 2217–2226.
- 17
- 17aW. J. Wang, J. H. Geiger, B. Borhan, Bioessays 2014, 36, 65–74;
- 17bW. J. Wang, Z. Nossoni, T. Berbasova, C. T. Watson, I. Yapici, K. S. S. Lee, C. Vasileiou, J. H. Geiger, B. Borhan, Science 2012, 338, 1340–1343.
- 18
- 18aE. Li, A. W. Norris, Annu. Rev. Nutr. 1996, 16, 205–234;
- 18bJ. Storch, B. Corsico, Annu. Rev. Nutr. 2008, 28, 73–95.
- 19
- 19aI. Yapici, K. S. S. Lee, T. Berbasova, M. Nosrati, X. F. Jia, C. Vasileiou, W. J. Wang, E. M. Santos, J. H. Geiger, B. Borhan, J. Am. Chem. Soc. 2015, 137, 1073–1080;
- 19bT. Berbasova, M. Nosrati, C. Vasileiou, W. Wang, K. S. Lee, I. Yapici, J. H. Geiger, B. Borhan, J. Am. Chem. Soc. 2013, 135, 16111–16119;
- 19cR. M. Crist, C. Vasileiou, M. Rabago-Smith, J. H. Geiger, B. Borhan, J. Am. Chem. Soc. 2006, 128, 4522–4523;
- 19dM. M. Huntress, S. Gozem, K. R. Malley, A. E. Jailaubekov, C. Vasileiou, M. Vengris, J. H. Geiger, B. Borhan, I. Schapiro, D. S. Larsen, M. Olivucci, J. Phys. Chem. B 2013, 117, 10053–10070;
- 19eK. S. S. Lee, T. Berbasova, C. Vasileiou, X. Jia, W. Wang, Y. Choi, F. Nossoni, J. H. Geiger, B. Borhan, ChemPlusChem 2012, 77, 273–276;
- 19fZ. Nossoni, Z. Assar, I. Yapici, M. Nosrati, W. Wang, T. Berbasova, C. Vasileiou, B. Borhan, J. Geiger, Acta Crystallogr. Sect. D Biol. Crystallogr. 2014, 70, 3226–3232;
- 19gS. Vaezeslami, X. Jia, C. Vasileiou, B. Borhan, J. H. Geiger, Acta Crystallogr. Sect. D Biol. Crystallogr. 2008, 64, 1228–1239;
- 19hS. Vaezeslami, E. Mathes, C. Vasilelou, B. Borhan, J. H. Geiger, J. Mol. Biol. 2006, 363, 687–701;
- 19iC. Vasileiou, K. S. S. Lee, R. M. Crist, S. Vaezeslami, S. A. Goins, J. H. Geiger, B. Borhan, Proteins Struct. Funct. Bioinf. 2009, 76, 281–290;
- 19jC. Vasileiou, S. Vaezeslami, R. M. Crist, M. Rabago-Smith, J. H. Geiger, B. Borhan, J. Am. Chem. Soc. 2007, 129, 6140–6148;
- 19kC. Vasileiou, W. Wang, X. Jia, K. S. S. Lee, C. T. Watson, J. H. Geiger, B. Borhan, Proteins Struct. Funct. Bioinf. 2009, 77, 812–822.
- 20W. Sheng, S. T. Nick, E. M. Santos, X. Ding, J. Zhang, C. Vasileiou, J. H. Geiger, B. Borhan, Angew. Chem. Int. Ed. 2018, 57, 16083–16087;
Angew. Chem. 2018, 130, 16315–16319.
10.1002/ange.201810065 Google Scholar
- 21
- 21aE. M. Merzlyak, J. Goedhart, D. Shcherbo, M. E. Bulina, A. S. Shcheglov, A. F. Fradkov, A. Gaintzeva, K. A. Lukyanov, S. Lukyanov, T. W. J. Gadella, D. M. Chudakov, Nat. Methods 2007, 4, 555–557;
- 21bN. C. Shaner, R. E. Campbell, P. A. Steinbach, B. N. G. Giepmans, A. E. Palmer, R. Y. Tsien, Nat. Biotechnol. 2004, 22, 1567–1572.
- 22S. Kredel, F. Oswald, K. Nienhaus, K. Deuschle, C. Rocker, M. Wolff, R. Heilker, G. U. Nienhaus, J. Wiedenmann, PLoS One 2009, 4, e4391.
- 23Y. Yue, F. Huo, S. Lee, C. Yin, J. Yoon, Analyst 2017, 142, 30–41.
- 24J. P. Richard, T. L. Amyes, J. Crugeiras, A. Rios, Curr. Opin. Chem. Biol. 2009, 13, 475–483.
- 25I. Yofe, U. Weill, M. Meurer, S. Chuartzman, E. Zalckvar, O. Goldman, S. Ben-Dora, C. Schutze, N. Wiedemann, M. Knop, A. Khmelinskii, M. Schuldiner, Nat. Methods 2016, 13, 371–378.
- 26K. D. Smith, P. B. Gordon, A. Rivetta, K. E. Allen, T. Berbasova, C. Slayman, S. A. Strobel, J. Biol. Chem. 2015, 290, 19874–19887.
- 27
- 27aS. S. Li, K. D. Smith, J. H. Davis, P. B. Gordon, R. R. Breaker, S. A. Strobel, Proc. Natl. Acad. Sci. USA 2013, 110, 19018–19023;
- 27bT. Berbasova, S. Nallur, T. Sells, K. D. Smith, P. B. Gordon, S. L. Tausta, S. A. Strobel, PLoS One 2017, 12, e0177096.